Departments of Biochemistry and Pathology, University of Utah School of Medicine, Salt Lake City, Utah 84112 and Biology Department, Brookhaven National Laboratory, Upton, New York 11973-
Abstract: yFACT -heterodimers of Saccharomyces cerevisiae Spt16-Pob3 combined with Nhp6- binds to and alters the properties of nucleosomes- The essential function of yFACT is not disrupted by deletion of the N-terminal domain -NTD- of Spt16 or by mutation of the middle domain of Pob3, but either alteration makes yeast cells sensitive to DNA replication stress- We have determined the structure of the Spt16 NTD and find evidence for a conserved potential peptide-binding site- Pob3-M also contains a putative binding site, and we show that these two sites perform an overlapping essential function- We find that yFACT can bind the N-terminal tails of some histones and that this interaction is important for yFACT-nucleosome binding- However, neither the Spt16 NTD nor a key residue in the putative Pob3-M-binding site was required for interactions with histone N termini or for yFACT-mediated nucleosome reorganization in vitro- Instead, both potential binding sites interact functionally with the C-terminal docking domain of the histone H2A- yFACT therefore appears to make multiple contacts with different sites within nucleosomes, and these interactions are partially redundant with one another- The docking domain of H2A is identified as an important participant in maintaining stability during yFACT-mediated nucleosome reorganization, suggesting new models for the mechanism of this activity-