Department of Physiological Chemistry, University Medical Centre Utrecht, Utrecht, The Netherlands-
Abstract: The Ccr4-Not complex consists of nine subunits and acts as a regulator of mRNA biogenesis in Saccharomyces cerevisiae- The human ortholog of yeast NOT4, CNOT4, displays UbcH5B-dependent ubiquitin-protein ligase -E3 ligase- activity in a reconstituted in vitro system- However, an in vivo role for this enzymatic activity has not been identified- Site-directed mutagenesis of the RING finger of yeast Not4p identified residues required for interaction with Ubc4p and Ubc5p, the yeast orthologs of UbcH5B- Subsequent in vitro assays with purified Ccr4-Not complexes showed Not4p-mediated E3 ligase activity, which was dependent on the interaction with Ubc4p- To investigate the in vivo relevance of this activity, we performed synthetic genetic array -SGA- analyses using not4Delta and not4L35A alleles- This indicates involvement of the RING finger of Not4p in transcription, ubiquitylation, and DNA damage responses- In addition, we found a phenotypic overlap between deletions of UBC4 and mutants encoding single-amino-acid substitutions of the RING finger of Not4p- Together, our results show that Not4p functions as an E3 ligase by modulating Ubc4p-Ubc5p-mediated stress responses in vivo-